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The scattering and absorption of light within biological tissue severely limits the penetration depth of optical imaging techniques. Recently, it has been found that water-soluble, strongly absorbing dye molecules, such as tartrazine, can achievein vivotissue transparency by increasing the refractive index of aqueous components in tissue, as predicted by the Lorentz oscillator model and Kramers–Kronig relations. In this study, we topically applied absorbing dye molecules to the abdominal skin of pigmented and nonpigmented mice to enhance the penetration depth of optical coherence tomography (OCT) and photoacoustic microscopy (PAM). In both types of mice, the penetration depth of OCT was significantly improved using tartrazine and 4-aminoantipyrine. As predicted by the Kramers–Kronig relations and absorption spectra of the dyes, mice treated with 4-aminoantipyrine showed significantly improved penetration depth compared to mice treated with tartrazine for the PAM system with 532 nm excitation. These findings further demonstrate the use of absorbing dye molecules for achieving tissue transparency to enhance the penetration depth of depth-resolved optical imaging modalities in skin, thus accelerating the translation of these technologies in clinical areas, such as dermatology.